Latest update

2025-03-29

Data Source

The data used for this project is from Yang et al., 2019: Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.

  • Table S2: Temporal Proteomic Data (0min, 30min, 1h, 6h, 12h, 24h, 36h, 48h, and 72h)
  • Table S3: Temporal Transcriptomic (RNA-Seq) Data (0min, 1h, 6h, 12h, 24h, 36h, 48h, and 72h)

For the purpuse of our project we realigned the count data for the transcriptomic data with the M11 mouse genome using STAR.

Proteome Data Head
UniprotID GeneID X0m X1h X6h X12h X24h X36h X48h X72h log2FC_0m_1h log2FC_1h_6h log2FC_6h_12h log2FC_12h_24h log2FC_24h_36h log2FC_36h_48h log2FC_48h_72h
Q8R3W2 0610009B22Rik 22.88820 22.58756 22.85770 22.71333 22.49104 22.28791 22.55330 22.90905 -0.3006400 0.2701394 -0.1443739 -0.22229103 -0.20312630 0.2653944 0.35574601
Q9DCS2 0610011F06Rik 25.81078 26.28141 26.05348 25.91008 25.43775 24.96838 24.84230 25.63992 0.4706273 -0.2279365 -0.1433905 -0.47233934 -0.46936564 -0.1260783 0.79762014
Q8BHG2 0610037L13Rik 28.65140 28.39190 28.52414 28.30400 28.25237 28.33117 28.45998 28.38369 -0.2595007 0.1322361 -0.2201394 -0.05162924 0.07879782 0.1288167 -0.07629738
V9GXF1 1110065P20Rik 24.46039 25.00402 24.59935 24.25717 24.35595 24.73614 24.76269 25.85162 0.5436275 -0.4046702 -0.3421763 0.09878239 0.38018522 0.0265473 1.08893786
Q8WUR0 1600014C10Rik 24.30800 23.75634 24.58228 25.11048 24.86278 25.11902 24.71790 23.50057 -0.5516615 0.8259393 0.5282067 -0.24770351 0.25624078 -0.4011161 -1.21733005
J3QMC0 1700003H04Rik 22.82848 24.14460 23.35124 23.62545 23.32869 23.17345 23.28715 NA 1.3161250 -0.7933624 0.2742035 -0.29675879 -0.15523247 0.1136942 NA
Transcriptome Data Head
original_id X0h_rep1 X0h_rep2 X1h_rep1 X1h_rep2 X6h_rep1 X6h_rep2 X12h_rep1 X12h_rep2 X24h_rep1 X24h_rep2 X36h_rep1 X36h_rep2 X48h_rep1 X48h_rep2 X72h_rep1 X72h_rep2 version ensembl_base gene_biotype mgi_symbol
ENSMUSG00000121438.1 486 535 599 526 971 975 790 801 941 847 886 581 414 629 99 161 1 ENSMUSG00000121438 lncRNA
ENSMUSG00000109644.3 41 32 60 44 62 45 101 84 112 110 98 97 31 36 41 41 3 ENSMUSG00000109644 lncRNA 0610005C13Rik
ENSMUSG00000108652.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ENSMUSG00000108652 lncRNA 0610006L08Rik
ENSMUSG00000086714.3 12 23 14 21 21 21 19 26 20 26 33 23 30 61 50 71 3 ENSMUSG00000086714 lncRNA 0610009E02Rik
ENSMUSG00000043644.6 49 34 69 66 38 34 53 41 56 62 62 43 41 66 103 91 6 ENSMUSG00000043644 lncRNA 0610009L18Rik
ENSMUSG00000020831.19 33 27 34 55 48 41 65 63 57 81 70 65 47 60 83 73 19 ENSMUSG00000020831 protein_coding 0610010K14Rik
RNA Binding Protein Target Motifs Enriched in ToD Candidates
RNA Binding Protein Enriched Motifs
in 5' and 3' UTRs of ToD Candidates
rank motif_id motif_alt_id consensus
Meme Ame Statistics
pvalue adj.pvalue evalue tests fasta_max pos neg pwm_min tp tp_percent fp fp_percent
1h_vs_0h_utr_5
1 M307_0.6 (Nono)_(Homo_sapiens)_(RBD_1.00) AGGGA 1.34e-05 9.08e-02 8.44e+00 7098 316 316 24587 1.34 115 36.39 6266 25.49
1h_vs_0h_utr_3
1 M245_0.6 (Ncl)_(Homo_sapiens)_(RBD_0.89) CCGAAAKCCCGAAGUAGG 3.35e-07 4.79e-05 4.46e-03 143 276 276 22400 15.30 7 2.54 31 0.14
2 M082_0.6 (Ybx2)_(Homo_sapiens)_(RBD_0.99) AACAWCD 1.33e-05 9.19e-02 8.55e+00 7266 276 276 22400 1.21 97 35.14 5302 23.67
6h_vs_1h_utr_5
1 M068_0.6 (Snrnp70)_(Homo_sapiens)_(RBD_1.00) RWUCAAG 2.32e-14 1.11e-10 1.04e-08 4800 324 324 24587 18.70 18 5.56 102 0.41
2 M151_0.6 (Hnrnph2)_(Homo_sapiens)_(RBD_0.99) GGGAGGG 7.98e-07 8.20e-03 7.63e-01 10323 324 324 24587 6.11 24 7.41 559 2.27
3 M052_0.6 (Rbm46)_(Homo_sapiens)_(RBD_0.99) AAUSAAD 5.69e-06 3.04e-02 2.83e+00 5429 324 324 24587 1.11 100 30.86 4996 20.32
4 M162_0.6 (Pabpc5)_(Homo_sapiens)_(RBD_0.96) AGAAAWU 5.94e-06 4.82e-02 4.49e+00 8329 324 324 24587 9.81 37 11.42 1253 5.10
5 M054_0.6 (Rbm8a)_(Homo_sapiens)_(RBD_1.00) GCGCGCG 9.56e-06 7.74e-02 7.20e+00 8425 324 324 24587 4.69 30 9.26 930 3.78
12h_vs_6h_utr_5
1 M056_0.6 (Srsf3)_(Drosophila_melanogaster)_(RBD_0.71) ACAACRR 3.26e-08 9.16e-05 8.52e-03 2810 248 248 24587 3.22 27 10.89 767 3.12
2 M231_0.6 (Eif2s1)_(Drosophila_melanogaster)_(RBD_0.89) WGCAUGM 4.37e-07 1.30e-03 1.21e-01 2973 248 248 24587 14.20 8 3.23 61 0.25
3 M331_0.6 (Srsf7)_(Homo_sapiens)_(RBD_1.00) AGACKACGAU 1.01e-05 1.68e-02 1.56e+00 1677 248 248 24587 1.25 33 13.31 1428 5.81
4 M159_0.6 (Rbfox1)_(Homo_sapiens)_(RBD_1.00) WGCAUGM 8.63e-06 2.20e-02 2.05e+00 2578 248 248 24587 14.20 8 3.23 94 0.38
5 M074_0.6 (Tardbp)_(Homo_sapiens)_(RBD_0.92) DGAAUGAD 1.12e-05 5.34e-02 4.97e+00 4903 248 248 24587 2.33 41 16.53 1986 8.08
24h_vs_12h_utr_5
1 M050_0.6 (ENSMUSG00000056951)_(Homo_sapiens)_(RBD_0.99) GCGCGGG 2.91e-06 2.59e-02 2.41e+00 9028 150 150 24587 36.90 4 2.67 13 0.05
2 M109_0.6 (Rbm4b)_(Homo_sapiens)_(RBD_0.99) GCGCGSG 5.83e-06 5.31e-02 4.94e+00 9348 150 150 24587 35.10 4 2.67 16 0.07
36h_vs_24h_utr_5
1 M012_0.6 (Cpeb2)_(Homo_sapiens)_(RBD_1.00) CWUUUUU 1.37e-06 8.68e-03 8.07e-01 6359 131 131 24587 10.70 21 16.03 1179 4.80
2 M150_0.6 (Raly)_(Homo_sapiens)_(RBD_0.97) UUUUUUG 2.94e-06 1.57e-02 1.46e+00 5401 131 131 24587 7.98 23 17.56 1454 5.91
3 M075_0.6 (Tial1)_(Homo_sapiens)_(RBD_0.89) UUUUUUG 2.78e-06 1.69e-02 1.57e+00 6147 131 131 24587 7.29 24 18.32 1560 6.34
4 M149_0.6 (Cpeb4)_(Homo_sapiens)_(RBD_1.00) CUUUUUU 3.30e-06 1.87e-02 1.73e+00 5701 131 131 24587 10.10 22 16.79 1355 5.51
48h_vs_36h_utr_5
1 M344_0.6 (Rbmx)_(Homo_sapiens)_(RBD_1.00) CCMB 5.70e-08 5.20e-04 4.84e-02 9131 140 140 24587 1.11 71 50.71 7119 28.95
48h_vs_36h_utr_3
1 M043_0.6 (Pcbp2)_(Homo_sapiens)_(RBD_1.00) CCYYCCC 5.57e-06 7.33e-02 6.82e+00 13675 134 134 22400 2.04 70 52.24 7473 33.36
72h_vs_48h_utr_5
1 M151_0.6 (Hnrnph2)_(Homo_sapiens)_(RBD_0.99) GGGAGGG 2.18e-06 2.18e-02 2.03e+00 10106 265 265 24587 2.47 62 23.40 3160 12.85
72h_vs_48h_utr_3
1 M024_0.6 (Hnrnpa2b1)_(Homo_sapiens)_(RBD_1.00) DUAGGGA 6.51e-07 4.12e-03 3.84e-01 6352 244 244 22400 1.12 91 37.30 5201 23.22
2 M307_0.6 (Nono)_(Homo_sapiens)_(RBD_1.00) AGGGA 4.93e-07 5.44e-03 5.06e-01 11056 244 244 22400 3.31 43 17.62 1742 7.78
3 M044_0.6 (Pprc1)_(Homo_sapiens)_(RBD_1.00) SSGCGCS 8.04e-06 1.98e-02 1.84e+00 2488 244 244 22400 1.77 24 9.84 786 3.51
4 M109_0.6 (Rbm4b)_(Homo_sapiens)_(RBD_0.99) GCGCGSG 2.98e-05 5.03e-02 4.67e+00 1729 244 244 22400 2.45 17 6.97 479 2.14
ToD candidates carrying RBP motifs
ToD genes carrying RBP motifs
in 5' UTRs of ToD Candidates 0h to 1h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M307_0.6
1 Aass 43 37 41 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Abhd14a 198 213 217 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Aff3 44 20 24 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Agap1 19 1 5 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 AI987944 310 52 56 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Axin1 78 70 74 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Btbd9 100 10 14 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Cacna1a 223 55 59 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Cbx6 297 34 38 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Ccnf 132 87 91 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Cdkn2d 270 81 85 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Cfap74 139 168 172 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Cgn 161 7 11 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Csnk1g2 93 1 5 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Cutc 264 8 12 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Dcbld1 73 7 11 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Dennd1b 96 39 43 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Dnajc14 208 106 110 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Enox2 194 93 97 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Flvcr2 54 154 158 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Gba2 25 7 11 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Golim4 50 145 149 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Gramd1b 119 9 13 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Hps4 51 375 379 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Jag1 16 56 60 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Mcoln1 257 25 29 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Napb 27 38 42 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Notch1 21 19 23 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Nprl2 307 105 109 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Otud5 153 25 29 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Pgap2 159 6 10 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Pknox1 207 31 35 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rab27a 55 49 53 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rad9a 189 11 15 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rassf1 7 176 180 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rgs19 183 8 12 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rhbdd3 155 4 8 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rhob 62 316 320 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rsrp1 91 221 225 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Rtca 214 36 40 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Slc38a2 26 309 313 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Snrnp35 133 4 8 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Sowahb 74 143 147 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Taf11 152 363 367 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Tcf3 215 119 123 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Tex15 246 64 68 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Tmc6 149 23 27 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Tmub2 202 173 177 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Tpst2 63 28 32 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Ttll5 285 1 5 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Zcchc2 145 56 60 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Zfp850 241 215 219 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
1 Zmym6 64 172 176 9.793 AGGGA 9.793 -33.29 9.793 100 + 0.0009765625 0.4537009
ToD genes carrying RBP motifs
in 3' UTRs of ToD Candidates 0h to 1h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M082_0.6
1 Aass 41 321 327 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Agap1 30 2621 2627 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 AI987944 65 115 121 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Axin1 101 92 98 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Btbd9 233 114 120 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Cacna1a 151 275 281 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Cdc42bpa 167 1405 1411 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Cfap74 136 1008 1014 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Csrnp2 73 2143 2149 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Cttnbp2 190 2823 2829 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Dennd1b 245 224 230 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Dnajc14 24 1710 1716 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Ebpl 15 402 408 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Fbxo9 179 87 93 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Flvcr2 58 1400 1406 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Gramd1b 171 421 427 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Mlh3 1 640 646 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Otud5 33 1178 1184 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Pknox1 267 561 567 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Rassf1 7 488 494 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Raver2 156 567 573 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Rgs19 10 152 158 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Rhob 80 998 1004 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Rsrp1 109 380 386 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Slain1 83 498 504 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Stil 260 176 182 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Taf11 25 267 273 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Tom1l2 72 3037 3043 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
1 Ttll5 118 229 235 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Zfp850 199 1417 1423 10.694 AACAACA 10.509 -27.182 10.694 100.000000 + 6.103516e-05 0.39010232
1 Zik1 52 2301 2307 10.509 AACAACU 10.509 -27.182 10.694 98.270058 + 1.220703e-04 0.51084827
M245_0.6
2 Agap1 30 879 896 -4.698 ACGAAAUCAUGAAUUCGG -4.698 -111.058 32.953 -14.256669 + 1.006560e-04 1.00000000
2 Cacna1a 151 168 185 10.326 CUGCAAGCCGGAAGGACG -4.698 -111.058 32.953 31.335538 + 1.122244e-06 0.07091406
2 Celf2 266 148 165 -3.696 CAGGCAGCCAGAAGGAAG -4.698 -111.058 32.953 -11.215974 + 7.647225e-05 1.00000000
2 Dennd1b 85 2692 2709 -1.657 CAGAAAACUGGAAGCAAG -4.698 -111.058 32.953 -5.028374 + 4.482178e-05 1.00000000
2 Golim4 54 721 738 -4.156 CAGAGAGGCCAAAGGAGC -4.698 -111.058 32.953 -12.611902 + 8.691434e-05 1.00000000
2 Napb 20 2480 2497 -3.384 UUGUAAUCCCGCAGUAUC -4.698 -111.058 32.953 -10.269171 + 7.111971e-05 1.00000000
2 Plch1 66 929 946 9.737 CUUAAAACCCAAAGUAGG -4.698 -111.058 32.953 29.548144 + 1.424414e-06 0.07091406
2 Rap2c 74 1464 1481 -2.573 AACAAAACCAAAACUAUG -4.698 -111.058 32.953 -7.808090 + 5.573774e-05 1.00000000
2 Rgs19 10 201 218 0.938 CUGAGAACCAGAUGUAGG -4.698 -111.058 32.953 2.846478 + 2.161668e-05 0.75332620
2 Rmi2 56 2516 2533 -3.191 CAGCCAGCCAGCAGUAGU -4.698 -111.058 32.953 -9.683489 + 6.734513e-05 1.00000000
2 Zfp850 199 3411 3428 -2.731 CAGAAAGCCAAAAAGAUG -4.698 -111.058 32.953 -8.287561 + 5.886679e-05 1.00000000
ToD genes carrying RBP motifs
in 5' UTRs of ToD Candidates 1h to 6h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M068_0.6
3 Lin28b 104 50 56 10.920 AAUCAAG 10.92 -23.650 11.671 93.56525 + 1.220703e-04 0.45092773
3 Wdr45 273 59 65 11.671 GAUCAAG 10.92 -23.650 11.671 100.00000 + 6.103516e-05 0.23733039
3 Zbed6 275 508 514 11.671 GAUCAAG 10.92 -23.650 11.671 100.00000 + 6.103516e-05 0.23733039
M151_0.6
4 Ap4m1 162 14 20 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Apoe 261 3 9 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Arrdc1 20 35 41 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Atp9a 82 39 45 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Bmpr1a 43 93 99 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Brsk1 313 47 53 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Capn3 222 115 121 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Cnot6 211 1 7 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Cst3 214 14 20 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Ctdsp2 93 124 130 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Dennd2a 65 1 7 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Dennd4b 224 109 115 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Dip2c 290 115 121 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Dnajc14 311 29 35 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Dsp 129 34 40 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Fam168b 234 16 22 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Fat1 262 64 70 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Fzr1 12 8 14 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 G2e3 52 177 183 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Gpsm2 39 71 77 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Habp4 249 22 28 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Jak1 156 253 259 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Lgals8 203 298 304 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Maml1 38 215 221 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Mapkapk2 13 91 97 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Midn 136 67 73 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Mrm1 1 13 19 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Mtf1 34 50 56 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Nr2c1 106 74 80 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Oplah 188 225 231 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Pank1 48 339 345 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Phtf2 178 8 14 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Ppp1r2 75 1 7 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Rimklb 300 68 74 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
4 Rps6ka6 80 53 59 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Schip1 236 44 50 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Sema4c 306 172 178 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Slc26a2 194 103 109 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Sptb 30 135 141 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Srsf11 153 80 86 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Suv39h1 220 16 22 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Syde2 251 137 143 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Tmem106b 133 101 107 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Tnfrsf21 28 175 181 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Trim37 63 153 159 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Twsg1 237 30 36 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Ubxn2a 14 213 219 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Wdr45 287 3 9 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.11088387
4 Zbed6 275 125 131 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.09394328
ToD genes carrying RBP motifs
in 5' UTRs of ToD Candidates 6h to 12h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M056_0.6
1 Enox2 34 180 186 11.468 ACAACGA 10.794 -24.424 11.468 100.00000 + 6.103516e-05 0.4377213
1 Klhdc10 125 5 11 10.794 ACAACGG 10.794 -24.424 11.468 94.12278 + 1.220703e-04 0.6366855
1 Notch1 129 61 67 10.794 ACAACGG 10.794 -24.424 11.468 94.12278 + 1.220703e-04 0.6366855
1 Trak1 184 237 243 11.468 ACAACGA 10.794 -24.424 11.468 100.00000 + 6.103516e-05 0.4377213
M074_0.6
2 Cystm1 239 95 102 11.571 AGAAUGAG 10.906 -25.554 11.571 100.00000 + 1.525879e-05 0.4358521
2 Dedd 193 28 35 11.527 UGAAUGAG 10.906 -25.554 11.571 99.61974 + 3.051758e-05 0.4358521
2 Ggta1 109 6 13 10.992 GGAAUGAG 10.906 -25.554 11.571 94.99611 + 7.629395e-05 0.4358521
2 Mpped2 120 30 37 11.439 AGAAUGAA 10.906 -25.554 11.571 98.85922 + 4.577637e-05 0.4358521
M231_0.6
4 Bnc2 180 9 15 11.209 AGCAUGC 11.061 -23.481 11.209 100.00000 + 6.103516e-05 0.2918142
4 Kctd9 131 528 534 11.209 AGCAUGC 11.061 -23.481 11.209 100.00000 + 6.103516e-05 0.2918142
4 Parp9 127 144 150 11.209 AGCAUGC 11.061 -23.481 11.209 100.00000 + 6.103516e-05 0.2918142
4 Trak1 151 16 22 11.209 AGCAUGC 11.061 -23.481 11.209 100.00000 + 6.103516e-05 0.2918142
ToD genes carrying RBP motifs
in 5' UTRs of ToD Candidates 12h to 24h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M109_0.6
2 Arf2 27 218 224 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Fgfr1 87 195 201 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Hif1a 9 7 13 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Hlcs 148 15 21 11.664 GCGCGGG 10.717 -26.25 11.664 100.000 + 6.103516e-05 0.1195535
2 Mthfsd 93 44 50 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Nuak2 24 54 60 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Phlpp1 28 59 65 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Srcin1 44 33 39 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Tbc1d2b 99 15 21 11.664 GCGCGGG 10.717 -26.25 11.664 100.000 + 6.103516e-05 0.1195535
2 Tmcc3 89 54 60 10.717 GCGCGCG 10.717 -26.25 11.664 91.881 + 1.220703e-04 0.1195535
2 Vangl1 1 149 155 11.664 GCGCGGG 10.717 -26.25 11.664 100.000 + 6.103516e-05 0.1195535
2 Zfp777 98 3 9 11.664 GCGCGGG 10.717 -26.25 11.664 100.000 + 6.103516e-05 0.1195535
ToD genes carrying RBP motifs
in 5' UTRs of ToD Candidates 24h to 36h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M075_0.6
2 Capn3 110 106 112 10.577 UUUUUUU 10.577 -25.307 11.726 90.20126 + 1.220703e-04 0.10140287
2 Chchd7 101 21 27 11.726 UUUUUUG 10.577 -25.307 11.726 100.00000 + 6.103516e-05 0.10140287
2 Dedd 61 25 31 11.726 UUUUUUG 10.577 -25.307 11.726 100.00000 + 6.103516e-05 0.10140287
2 Foxp1 102 155 161 11.726 UUUUUUG 10.577 -25.307 11.726 100.00000 + 6.103516e-05 0.10140287
2 Jag1 15 1 7 10.577 UUUUUUU 10.577 -25.307 11.726 90.20126 + 1.220703e-04 0.10140287
2 Peli1 49 136 142 10.577 UUUUUUU 10.577 -25.307 11.726 90.20126 + 1.220703e-04 0.10140287
2 Spta1 29 33 39 10.577 UUUUUUU 10.577 -25.307 11.726 90.20126 + 1.220703e-04 0.10140287
2 Tmem102 16 144 150 10.577 UUUUUUU 10.577 -25.307 11.726 90.20126 + 1.220703e-04 0.10140287
M149_0.6
3 Capn3 110 106 112 10.929 UUUUUUU 10.929 -25.272 12.050 90.69710 + 1.220703e-04 0.09415981
3 Chchd7 101 20 26 12.050 CUUUUUU 10.929 -25.272 12.050 100.00000 + 6.103516e-05 0.09415981
3 Dedd 61 24 30 12.050 CUUUUUU 10.929 -25.272 12.050 100.00000 + 6.103516e-05 0.09415981
3 Foxp1 102 154 160 12.050 CUUUUUU 10.929 -25.272 12.050 100.00000 + 6.103516e-05 0.09415981
3 Jag1 15 1 7 10.929 UUUUUUU 10.929 -25.272 12.050 90.69710 + 1.220703e-04 0.09415981
3 Peli1 49 136 142 10.929 UUUUUUU 10.929 -25.272 12.050 90.69710 + 1.220703e-04 0.09415981
3 Spta1 29 32 38 12.050 CUUUUUU 10.929 -25.272 12.050 100.00000 + 6.103516e-05 0.09415981
3 Tmem102 16 143 149 12.050 CUUUUUU 10.929 -25.272 12.050 100.00000 + 6.103516e-05 0.09415981
M150_0.6
4 Capn3 110 106 112 10.833 UUUUUUU 10.833 -26.250 12.280 88.21661 + 1.220703e-04 0.10140287
4 Chchd7 101 21 27 12.280 UUUUUUG 10.833 -26.250 12.280 100.00000 + 6.103516e-05 0.10140287
4 Dedd 61 25 31 12.280 UUUUUUG 10.833 -26.250 12.280 100.00000 + 6.103516e-05 0.10140287
4 Foxp1 102 155 161 12.280 UUUUUUG 10.833 -26.250 12.280 100.00000 + 6.103516e-05 0.10140287
4 Jag1 15 1 7 10.833 UUUUUUU 10.833 -26.250 12.280 88.21661 + 1.220703e-04 0.10140287
4 Peli1 49 136 142 10.833 UUUUUUU 10.833 -26.250 12.280 88.21661 + 1.220703e-04 0.10140287
4 Spta1 29 33 39 10.833 UUUUUUU 10.833 -26.250 12.280 88.21661 + 1.220703e-04 0.10140287
4 Tmem102 16 144 150 10.833 UUUUUUU 10.833 -26.250 12.280 88.21661 + 1.220703e-04 0.10140287
ToD genes carrying RBP motifs
in 5' UTRs of ToD Candidates 36h to 48h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M344_0.6
1 Abcd4 117 128 131 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Arhgap27 64 9 12 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 B4galt1 13 32 35 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Bcl2l11 83 16 19 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Cdkn2d 123 34 37 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Cenpn 104 272 275 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Clcn2 77 201 204 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Fam222b 52 29 32 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Flnc 58 37 40 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Flywch1 26 27 30 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Fndc9 50 45 48 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Fstl1 84 172 175 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Jph4 71 159 162 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Kank1 37 107 110 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Mapk6 20 65 68 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Mbtps1 32 176 179 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Mlh3 94 39 42 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Mlxip 47 118 121 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Mocs1 14 15 18 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Mutyh 81 78 81 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Myo1d 22 11 14 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Nr2f6 2 65 68 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Odf2l 131 125 128 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Plxnb1 48 64 67 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Ppp1r16a 89 55 58 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Rbm47 108 2 5 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Rnf111 6 105 108 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Rragd 41 80 83 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Sall2 92 13 16 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Sbno2 23 11 14 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Shroom4 63 23 26 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Slc29a2 96 7 10 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Spata24 99 13 16 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Stk16 112 33 36 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Tmem245 49 12 15 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Traf3ip2 3 77 80 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Trak1 128 1 4 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Trio 102 53 56 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Vasn 19 10 13 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Wwp1 91 169 172 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Zfp395 98 45 48 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Zfp433 118 25 28 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Zfp597 38 302 305 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
1 Zfp7 101 52 55 6.133 CCAG 6.133 -26.632 6.133 100 + 0.00390625 0.4640289
ToD genes carrying RBP motifs
in 3' UTRs of ToD Candidates 36h to 48h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M043_0.6
1 B4galt1 13 1300 1306 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Bcl2l11 42 1787 1793 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Clip2 26 365 371 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Fam222b 32 169 175 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Flywch1 25 64 70 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Fndc9 49 480 486 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Glt1d1 88 2142 2148 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Jam3 7 581 587 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Jph4 18 145 151 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Lin28b 47 3145 3151 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Mapk6 27 1052 1058 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Mlh3 16 379 385 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Mlxip 38 2861 2867 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Mocs1 87 37 43 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Myo1d 20 458 464 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Plxnb1 44 1609 1615 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Pyurf 59 1059 1065 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Rbm47 58 895 901 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Sall2 46 675 681 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Sbno2 124 105 111 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Shroom4 50 552 558 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Slc29a2 114 24 30 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Tmem245 45 3804 3810 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Trak1 104 53 59 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Trio 112 299 305 9.659 CCUCCCC 9.659 -21.505 10.507 91.92919 + 1.220703e-04 0.2468018
1 Wwp1 24 1776 1782 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
1 Zfp395 33 489 495 10.507 CCUUCCC 9.659 -21.505 10.507 100.00000 + 6.103516e-05 0.2330905
ToD genes carrying RBP motifs
in 5' UTRs of ToD Candidates 48h to 72h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M151_0.6
1 1110065P20Rik 144 40 46 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Arhgap27 117 39 45 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Arhgef25 245 324 330 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Clcn7 142 2 8 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Cpeb4 17 10 16 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Dennd4a 35 70 76 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 E2f6 212 9 15 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Eef2k 41 266 272 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Elovl6 118 68 74 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Enkd1 217 82 88 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Extl2 86 104 110 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Fyn 152 69 75 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Galnt3 30 297 303 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Gpsm2 33 71 77 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Kat2a 13 54 60 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Kif5c 32 258 264 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Mid1 108 78 84 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Mrm1 11 13 19 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Nbeal2 149 15 21 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Neo1 224 124 130 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Plxnb1 165 28 34 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Pmvk 22 21 27 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Ppp2r5b 24 10 16 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Rab31 79 34 40 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Rbsn 258 246 252 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Sclt1 174 342 348 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Sema4c 242 172 178 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Sirpa 75 266 272 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Sirt5 237 195 201 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Six5 64 1 7 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Socs6 136 28 34 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Stambpl1 151 81 87 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Syt13 23 58 64 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Tex264 236 3 9 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Tlcd1 189 19 25 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Tmub1 133 8 14 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Uvrag 244 115 121 9.360 GGGAGGC 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Zbed4 65 39 45 11.532 GGGAGGG 9.36 -21.392 11.532 100.00000 + 6.103516e-05 0.1073765
1 Zfhx3 250 253 259 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
1 Zfp59 200 104 110 9.360 GGGAGGA 9.36 -21.392 11.532 81.16545 + 1.831055e-04 0.1225493
ToD genes carrying RBP motifs
in 3' UTRs of ToD Candidates 48h to 72h
motif.i sequence sequence.i start stop score match thresh.score min.score max.score score.pct strand pvalue qvalue
M044_0.6
2 Dennd4a 61 1582 1588 10.141 GCGCGCG 9.789 -20.902 10.141 100.00000 + 6.103516e-05 1.0000000
2 Lrfn1 74 168 174 9.789 CCGCGCG 9.789 -20.902 10.141 96.52894 + 1.220703e-04 1.0000000
M109_0.6
3 Dennd4a 61 1582 1588 10.717 GCGCGCG 10.717 -26.250 11.664 91.88100 + 1.220703e-04 1.0000000
3 Lrfn1 74 214 220 11.664 GCGCGGG 10.717 -26.250 11.664 100.00000 + 6.103516e-05 1.0000000
3 Mapk8ip3 148 717 723 11.664 GCGCGGG 10.717 -26.250 11.664 100.00000 + 6.103516e-05 1.0000000
3 Mid1 41 1534 1540 11.664 GCGCGGG 10.717 -26.250 11.664 100.00000 + 6.103516e-05 1.0000000
M307_0.6
4 A430033K04Rik 126 9 13 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Aifm2 115 2 6 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Ap1g2 59 201 205 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Apba3 58 53 57 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Aplf 44 1030 1034 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Arhgap27 64 226 230 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Arhgef25 14 142 146 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Atrip 150 182 186 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Bbs1 234 688 692 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Camk2b 81 1401 1405 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Cass4 111 398 402 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Cdr2l 68 809 813 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Cep128 138 13 17 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Clcn7 46 451 455 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Cldn6 21 31 35 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Cnnm4 175 153 157 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Cpeb4 99 1708 1712 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Dennd4a 61 163 167 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 E2f6 12 571 575 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Eef2k 71 40 44 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Eid2 45 115 119 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Elovl6 82 888 892 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Enkd1 8 33 37 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Extl2 31 421 425 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Fancm 63 323 327 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Fbxo42 24 700 704 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Gpsm2 26 66 70 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Gpt2 165 910 914 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Jph1 69 591 595 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Kat2a 3 98 102 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Kif5c 19 328 332 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Lrfn1 74 83 87 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Mapk8ip3 118 147 151 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Mid1 41 29 33 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Mmab 66 113 117 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Mrm1 4 393 397 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Mtfp1 16 351 355 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Nbeal2 183 102 106 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Neo1 125 265 269 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Pick1 13 219 223 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Plxnb1 77 6 10 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Ppp2r5b 32 261 265 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Prex2 23 484 488 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Rab13 40 48 52 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Rab31 127 154 158 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Rbsn 17 436 440 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Rdh11 149 16 20 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Rnd3 6 282 286 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Rogdi 25 320 324 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Rpl37 36 339 343 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Sclt1 174 220 224 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Sema4c 102 81 85 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Sirpa 56 1146 1150 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Sirt5 239 278 282 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Six5 50 143 147 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Slc1a3 15 877 881 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Slc35a4 54 495 499 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Sntb1 38 178 182 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Socs6 103 188 192 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Syt13 28 781 785 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tada2b 22 1655 1659 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Thap4 93 254 258 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tlcd1 100 26 30 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tmem104 53 646 650 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tmem161a 171 241 245 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tmem177 62 774 778 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tmem38b 34 131 135 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tmub1 35 62 66 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tnip2 30 45 49 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tob1 65 714 718 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Tsc22d3 55 834 838 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Uvrag 57 45 49 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Wdr54 131 99 103 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zbed4 48 896 900 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zfhx3 43 1649 1653 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zfp266 197 1073 1077 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zfp59 215 28 32 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zfp7 10 138 142 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zfp748 206 137 141 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zfp871 47 904 908 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055
4 Zfyve21 5 6 10 9.793 AGGGA 9.793 -33.290 9.793 100.00000 + 9.765625e-04 0.6235055