Latest update
2025-03-29
The data used for this project is from Yang et al., 2019: Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.
For the purpuse of our project we realigned the count data for the transcriptomic data with the M11 mouse genome using STAR.
| UniprotID | GeneID | X0m | X1h | X6h | X12h | X24h | X36h | X48h | X72h | log2FC_0m_1h | log2FC_1h_6h | log2FC_6h_12h | log2FC_12h_24h | log2FC_24h_36h | log2FC_36h_48h | log2FC_48h_72h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Q8R3W2 | 0610009B22Rik | 22.88820 | 22.58756 | 22.85770 | 22.71333 | 22.49104 | 22.28791 | 22.55330 | 22.90905 | -0.3006400 | 0.2701394 | -0.1443739 | -0.22229103 | -0.20312630 | 0.2653944 | 0.35574601 |
| Q9DCS2 | 0610011F06Rik | 25.81078 | 26.28141 | 26.05348 | 25.91008 | 25.43775 | 24.96838 | 24.84230 | 25.63992 | 0.4706273 | -0.2279365 | -0.1433905 | -0.47233934 | -0.46936564 | -0.1260783 | 0.79762014 |
| Q8BHG2 | 0610037L13Rik | 28.65140 | 28.39190 | 28.52414 | 28.30400 | 28.25237 | 28.33117 | 28.45998 | 28.38369 | -0.2595007 | 0.1322361 | -0.2201394 | -0.05162924 | 0.07879782 | 0.1288167 | -0.07629738 |
| V9GXF1 | 1110065P20Rik | 24.46039 | 25.00402 | 24.59935 | 24.25717 | 24.35595 | 24.73614 | 24.76269 | 25.85162 | 0.5436275 | -0.4046702 | -0.3421763 | 0.09878239 | 0.38018522 | 0.0265473 | 1.08893786 |
| Q8WUR0 | 1600014C10Rik | 24.30800 | 23.75634 | 24.58228 | 25.11048 | 24.86278 | 25.11902 | 24.71790 | 23.50057 | -0.5516615 | 0.8259393 | 0.5282067 | -0.24770351 | 0.25624078 | -0.4011161 | -1.21733005 |
| J3QMC0 | 1700003H04Rik | 22.82848 | 24.14460 | 23.35124 | 23.62545 | 23.32869 | 23.17345 | 23.28715 | NA | 1.3161250 | -0.7933624 | 0.2742035 | -0.29675879 | -0.15523247 | 0.1136942 | NA |
| original_id | X0h_rep1 | X0h_rep2 | X1h_rep1 | X1h_rep2 | X6h_rep1 | X6h_rep2 | X12h_rep1 | X12h_rep2 | X24h_rep1 | X24h_rep2 | X36h_rep1 | X36h_rep2 | X48h_rep1 | X48h_rep2 | X72h_rep1 | X72h_rep2 | version | ensembl_base | gene_biotype | mgi_symbol |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSMUSG00000121438.1 | 486 | 535 | 599 | 526 | 971 | 975 | 790 | 801 | 941 | 847 | 886 | 581 | 414 | 629 | 99 | 161 | 1 | ENSMUSG00000121438 | lncRNA | |
| ENSMUSG00000109644.3 | 41 | 32 | 60 | 44 | 62 | 45 | 101 | 84 | 112 | 110 | 98 | 97 | 31 | 36 | 41 | 41 | 3 | ENSMUSG00000109644 | lncRNA | 0610005C13Rik |
| ENSMUSG00000108652.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | ENSMUSG00000108652 | lncRNA | 0610006L08Rik |
| ENSMUSG00000086714.3 | 12 | 23 | 14 | 21 | 21 | 21 | 19 | 26 | 20 | 26 | 33 | 23 | 30 | 61 | 50 | 71 | 3 | ENSMUSG00000086714 | lncRNA | 0610009E02Rik |
| ENSMUSG00000043644.6 | 49 | 34 | 69 | 66 | 38 | 34 | 53 | 41 | 56 | 62 | 62 | 43 | 41 | 66 | 103 | 91 | 6 | ENSMUSG00000043644 | lncRNA | 0610009L18Rik |
| ENSMUSG00000020831.19 | 33 | 27 | 34 | 55 | 48 | 41 | 65 | 63 | 57 | 81 | 70 | 65 | 47 | 60 | 83 | 73 | 19 | ENSMUSG00000020831 | protein_coding | 0610010K14Rik |
| RNA Binding Protein Enriched Motifs | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' and 3' UTRs of ToD Candidates | |||||||||||||||
| rank | motif_id | motif_alt_id | consensus |
Meme Ame Statistics
|
|||||||||||
| pvalue | adj.pvalue | evalue | tests | fasta_max | pos | neg | pwm_min | tp | tp_percent | fp | fp_percent | ||||
| 1h_vs_0h_utr_5 | |||||||||||||||
| 1 | M307_0.6 | (Nono)_(Homo_sapiens)_(RBD_1.00) | AGGGA | 1.34e-05 | 9.08e-02 | 8.44e+00 | 7098 | 316 | 316 | 24587 | 1.34 | 115 | 36.39 | 6266 | 25.49 |
| 1h_vs_0h_utr_3 | |||||||||||||||
| 1 | M245_0.6 | (Ncl)_(Homo_sapiens)_(RBD_0.89) | CCGAAAKCCCGAAGUAGG | 3.35e-07 | 4.79e-05 | 4.46e-03 | 143 | 276 | 276 | 22400 | 15.30 | 7 | 2.54 | 31 | 0.14 |
| 2 | M082_0.6 | (Ybx2)_(Homo_sapiens)_(RBD_0.99) | AACAWCD | 1.33e-05 | 9.19e-02 | 8.55e+00 | 7266 | 276 | 276 | 22400 | 1.21 | 97 | 35.14 | 5302 | 23.67 |
| 6h_vs_1h_utr_5 | |||||||||||||||
| 1 | M068_0.6 | (Snrnp70)_(Homo_sapiens)_(RBD_1.00) | RWUCAAG | 2.32e-14 | 1.11e-10 | 1.04e-08 | 4800 | 324 | 324 | 24587 | 18.70 | 18 | 5.56 | 102 | 0.41 |
| 2 | M151_0.6 | (Hnrnph2)_(Homo_sapiens)_(RBD_0.99) | GGGAGGG | 7.98e-07 | 8.20e-03 | 7.63e-01 | 10323 | 324 | 324 | 24587 | 6.11 | 24 | 7.41 | 559 | 2.27 |
| 3 | M052_0.6 | (Rbm46)_(Homo_sapiens)_(RBD_0.99) | AAUSAAD | 5.69e-06 | 3.04e-02 | 2.83e+00 | 5429 | 324 | 324 | 24587 | 1.11 | 100 | 30.86 | 4996 | 20.32 |
| 4 | M162_0.6 | (Pabpc5)_(Homo_sapiens)_(RBD_0.96) | AGAAAWU | 5.94e-06 | 4.82e-02 | 4.49e+00 | 8329 | 324 | 324 | 24587 | 9.81 | 37 | 11.42 | 1253 | 5.10 |
| 5 | M054_0.6 | (Rbm8a)_(Homo_sapiens)_(RBD_1.00) | GCGCGCG | 9.56e-06 | 7.74e-02 | 7.20e+00 | 8425 | 324 | 324 | 24587 | 4.69 | 30 | 9.26 | 930 | 3.78 |
| 12h_vs_6h_utr_5 | |||||||||||||||
| 1 | M056_0.6 | (Srsf3)_(Drosophila_melanogaster)_(RBD_0.71) | ACAACRR | 3.26e-08 | 9.16e-05 | 8.52e-03 | 2810 | 248 | 248 | 24587 | 3.22 | 27 | 10.89 | 767 | 3.12 |
| 2 | M231_0.6 | (Eif2s1)_(Drosophila_melanogaster)_(RBD_0.89) | WGCAUGM | 4.37e-07 | 1.30e-03 | 1.21e-01 | 2973 | 248 | 248 | 24587 | 14.20 | 8 | 3.23 | 61 | 0.25 |
| 3 | M331_0.6 | (Srsf7)_(Homo_sapiens)_(RBD_1.00) | AGACKACGAU | 1.01e-05 | 1.68e-02 | 1.56e+00 | 1677 | 248 | 248 | 24587 | 1.25 | 33 | 13.31 | 1428 | 5.81 |
| 4 | M159_0.6 | (Rbfox1)_(Homo_sapiens)_(RBD_1.00) | WGCAUGM | 8.63e-06 | 2.20e-02 | 2.05e+00 | 2578 | 248 | 248 | 24587 | 14.20 | 8 | 3.23 | 94 | 0.38 |
| 5 | M074_0.6 | (Tardbp)_(Homo_sapiens)_(RBD_0.92) | DGAAUGAD | 1.12e-05 | 5.34e-02 | 4.97e+00 | 4903 | 248 | 248 | 24587 | 2.33 | 41 | 16.53 | 1986 | 8.08 |
| 24h_vs_12h_utr_5 | |||||||||||||||
| 1 | M050_0.6 | (ENSMUSG00000056951)_(Homo_sapiens)_(RBD_0.99) | GCGCGGG | 2.91e-06 | 2.59e-02 | 2.41e+00 | 9028 | 150 | 150 | 24587 | 36.90 | 4 | 2.67 | 13 | 0.05 |
| 2 | M109_0.6 | (Rbm4b)_(Homo_sapiens)_(RBD_0.99) | GCGCGSG | 5.83e-06 | 5.31e-02 | 4.94e+00 | 9348 | 150 | 150 | 24587 | 35.10 | 4 | 2.67 | 16 | 0.07 |
| 36h_vs_24h_utr_5 | |||||||||||||||
| 1 | M012_0.6 | (Cpeb2)_(Homo_sapiens)_(RBD_1.00) | CWUUUUU | 1.37e-06 | 8.68e-03 | 8.07e-01 | 6359 | 131 | 131 | 24587 | 10.70 | 21 | 16.03 | 1179 | 4.80 |
| 2 | M150_0.6 | (Raly)_(Homo_sapiens)_(RBD_0.97) | UUUUUUG | 2.94e-06 | 1.57e-02 | 1.46e+00 | 5401 | 131 | 131 | 24587 | 7.98 | 23 | 17.56 | 1454 | 5.91 |
| 3 | M075_0.6 | (Tial1)_(Homo_sapiens)_(RBD_0.89) | UUUUUUG | 2.78e-06 | 1.69e-02 | 1.57e+00 | 6147 | 131 | 131 | 24587 | 7.29 | 24 | 18.32 | 1560 | 6.34 |
| 4 | M149_0.6 | (Cpeb4)_(Homo_sapiens)_(RBD_1.00) | CUUUUUU | 3.30e-06 | 1.87e-02 | 1.73e+00 | 5701 | 131 | 131 | 24587 | 10.10 | 22 | 16.79 | 1355 | 5.51 |
| 48h_vs_36h_utr_5 | |||||||||||||||
| 1 | M344_0.6 | (Rbmx)_(Homo_sapiens)_(RBD_1.00) | CCMB | 5.70e-08 | 5.20e-04 | 4.84e-02 | 9131 | 140 | 140 | 24587 | 1.11 | 71 | 50.71 | 7119 | 28.95 |
| 48h_vs_36h_utr_3 | |||||||||||||||
| 1 | M043_0.6 | (Pcbp2)_(Homo_sapiens)_(RBD_1.00) | CCYYCCC | 5.57e-06 | 7.33e-02 | 6.82e+00 | 13675 | 134 | 134 | 22400 | 2.04 | 70 | 52.24 | 7473 | 33.36 |
| 72h_vs_48h_utr_5 | |||||||||||||||
| 1 | M151_0.6 | (Hnrnph2)_(Homo_sapiens)_(RBD_0.99) | GGGAGGG | 2.18e-06 | 2.18e-02 | 2.03e+00 | 10106 | 265 | 265 | 24587 | 2.47 | 62 | 23.40 | 3160 | 12.85 |
| 72h_vs_48h_utr_3 | |||||||||||||||
| 1 | M024_0.6 | (Hnrnpa2b1)_(Homo_sapiens)_(RBD_1.00) | DUAGGGA | 6.51e-07 | 4.12e-03 | 3.84e-01 | 6352 | 244 | 244 | 22400 | 1.12 | 91 | 37.30 | 5201 | 23.22 |
| 2 | M307_0.6 | (Nono)_(Homo_sapiens)_(RBD_1.00) | AGGGA | 4.93e-07 | 5.44e-03 | 5.06e-01 | 11056 | 244 | 244 | 22400 | 3.31 | 43 | 17.62 | 1742 | 7.78 |
| 3 | M044_0.6 | (Pprc1)_(Homo_sapiens)_(RBD_1.00) | SSGCGCS | 8.04e-06 | 1.98e-02 | 1.84e+00 | 2488 | 244 | 244 | 22400 | 1.77 | 24 | 9.84 | 786 | 3.51 |
| 4 | M109_0.6 | (Rbm4b)_(Homo_sapiens)_(RBD_0.99) | GCGCGSG | 2.98e-05 | 5.03e-02 | 4.67e+00 | 1729 | 244 | 244 | 22400 | 2.45 | 17 | 6.97 | 479 | 2.14 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' UTRs of ToD Candidates 0h to 1h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M307_0.6 | |||||||||||||
| 1 | Aass | 43 | 37 | 41 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Abhd14a | 198 | 213 | 217 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Aff3 | 44 | 20 | 24 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Agap1 | 19 | 1 | 5 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | AI987944 | 310 | 52 | 56 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Axin1 | 78 | 70 | 74 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Btbd9 | 100 | 10 | 14 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Cacna1a | 223 | 55 | 59 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Cbx6 | 297 | 34 | 38 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Ccnf | 132 | 87 | 91 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Cdkn2d | 270 | 81 | 85 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Cfap74 | 139 | 168 | 172 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Cgn | 161 | 7 | 11 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Csnk1g2 | 93 | 1 | 5 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Cutc | 264 | 8 | 12 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Dcbld1 | 73 | 7 | 11 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Dennd1b | 96 | 39 | 43 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Dnajc14 | 208 | 106 | 110 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Enox2 | 194 | 93 | 97 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Flvcr2 | 54 | 154 | 158 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Gba2 | 25 | 7 | 11 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Golim4 | 50 | 145 | 149 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Gramd1b | 119 | 9 | 13 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Hps4 | 51 | 375 | 379 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Jag1 | 16 | 56 | 60 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Mcoln1 | 257 | 25 | 29 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Napb | 27 | 38 | 42 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Notch1 | 21 | 19 | 23 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Nprl2 | 307 | 105 | 109 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Otud5 | 153 | 25 | 29 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Pgap2 | 159 | 6 | 10 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Pknox1 | 207 | 31 | 35 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rab27a | 55 | 49 | 53 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rad9a | 189 | 11 | 15 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rassf1 | 7 | 176 | 180 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rgs19 | 183 | 8 | 12 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rhbdd3 | 155 | 4 | 8 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rhob | 62 | 316 | 320 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rsrp1 | 91 | 221 | 225 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Rtca | 214 | 36 | 40 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Slc38a2 | 26 | 309 | 313 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Snrnp35 | 133 | 4 | 8 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Sowahb | 74 | 143 | 147 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Taf11 | 152 | 363 | 367 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Tcf3 | 215 | 119 | 123 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Tex15 | 246 | 64 | 68 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Tmc6 | 149 | 23 | 27 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Tmub2 | 202 | 173 | 177 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Tpst2 | 63 | 28 | 32 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Ttll5 | 285 | 1 | 5 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Zcchc2 | 145 | 56 | 60 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Zfp850 | 241 | 215 | 219 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| 1 | Zmym6 | 64 | 172 | 176 | 9.793 | AGGGA | 9.793 | -33.29 | 9.793 | 100 | + | 0.0009765625 | 0.4537009 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 3' UTRs of ToD Candidates 0h to 1h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M082_0.6 | |||||||||||||
| 1 | Aass | 41 | 321 | 327 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Agap1 | 30 | 2621 | 2627 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | AI987944 | 65 | 115 | 121 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Axin1 | 101 | 92 | 98 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Btbd9 | 233 | 114 | 120 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Cacna1a | 151 | 275 | 281 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Cdc42bpa | 167 | 1405 | 1411 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Cfap74 | 136 | 1008 | 1014 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Csrnp2 | 73 | 2143 | 2149 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Cttnbp2 | 190 | 2823 | 2829 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Dennd1b | 245 | 224 | 230 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Dnajc14 | 24 | 1710 | 1716 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Ebpl | 15 | 402 | 408 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Fbxo9 | 179 | 87 | 93 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Flvcr2 | 58 | 1400 | 1406 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Gramd1b | 171 | 421 | 427 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Mlh3 | 1 | 640 | 646 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Otud5 | 33 | 1178 | 1184 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Pknox1 | 267 | 561 | 567 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Rassf1 | 7 | 488 | 494 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Raver2 | 156 | 567 | 573 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Rgs19 | 10 | 152 | 158 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Rhob | 80 | 998 | 1004 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Rsrp1 | 109 | 380 | 386 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Slain1 | 83 | 498 | 504 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Stil | 260 | 176 | 182 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Taf11 | 25 | 267 | 273 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Tom1l2 | 72 | 3037 | 3043 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| 1 | Ttll5 | 118 | 229 | 235 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Zfp850 | 199 | 1417 | 1423 | 10.694 | AACAACA | 10.509 | -27.182 | 10.694 | 100.000000 | + | 6.103516e-05 | 0.39010232 |
| 1 | Zik1 | 52 | 2301 | 2307 | 10.509 | AACAACU | 10.509 | -27.182 | 10.694 | 98.270058 | + | 1.220703e-04 | 0.51084827 |
| M245_0.6 | |||||||||||||
| 2 | Agap1 | 30 | 879 | 896 | -4.698 | ACGAAAUCAUGAAUUCGG | -4.698 | -111.058 | 32.953 | -14.256669 | + | 1.006560e-04 | 1.00000000 |
| 2 | Cacna1a | 151 | 168 | 185 | 10.326 | CUGCAAGCCGGAAGGACG | -4.698 | -111.058 | 32.953 | 31.335538 | + | 1.122244e-06 | 0.07091406 |
| 2 | Celf2 | 266 | 148 | 165 | -3.696 | CAGGCAGCCAGAAGGAAG | -4.698 | -111.058 | 32.953 | -11.215974 | + | 7.647225e-05 | 1.00000000 |
| 2 | Dennd1b | 85 | 2692 | 2709 | -1.657 | CAGAAAACUGGAAGCAAG | -4.698 | -111.058 | 32.953 | -5.028374 | + | 4.482178e-05 | 1.00000000 |
| 2 | Golim4 | 54 | 721 | 738 | -4.156 | CAGAGAGGCCAAAGGAGC | -4.698 | -111.058 | 32.953 | -12.611902 | + | 8.691434e-05 | 1.00000000 |
| 2 | Napb | 20 | 2480 | 2497 | -3.384 | UUGUAAUCCCGCAGUAUC | -4.698 | -111.058 | 32.953 | -10.269171 | + | 7.111971e-05 | 1.00000000 |
| 2 | Plch1 | 66 | 929 | 946 | 9.737 | CUUAAAACCCAAAGUAGG | -4.698 | -111.058 | 32.953 | 29.548144 | + | 1.424414e-06 | 0.07091406 |
| 2 | Rap2c | 74 | 1464 | 1481 | -2.573 | AACAAAACCAAAACUAUG | -4.698 | -111.058 | 32.953 | -7.808090 | + | 5.573774e-05 | 1.00000000 |
| 2 | Rgs19 | 10 | 201 | 218 | 0.938 | CUGAGAACCAGAUGUAGG | -4.698 | -111.058 | 32.953 | 2.846478 | + | 2.161668e-05 | 0.75332620 |
| 2 | Rmi2 | 56 | 2516 | 2533 | -3.191 | CAGCCAGCCAGCAGUAGU | -4.698 | -111.058 | 32.953 | -9.683489 | + | 6.734513e-05 | 1.00000000 |
| 2 | Zfp850 | 199 | 3411 | 3428 | -2.731 | CAGAAAGCCAAAAAGAUG | -4.698 | -111.058 | 32.953 | -8.287561 | + | 5.886679e-05 | 1.00000000 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' UTRs of ToD Candidates 1h to 6h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M068_0.6 | |||||||||||||
| 3 | Lin28b | 104 | 50 | 56 | 10.920 | AAUCAAG | 10.92 | -23.650 | 11.671 | 93.56525 | + | 1.220703e-04 | 0.45092773 |
| 3 | Wdr45 | 273 | 59 | 65 | 11.671 | GAUCAAG | 10.92 | -23.650 | 11.671 | 100.00000 | + | 6.103516e-05 | 0.23733039 |
| 3 | Zbed6 | 275 | 508 | 514 | 11.671 | GAUCAAG | 10.92 | -23.650 | 11.671 | 100.00000 | + | 6.103516e-05 | 0.23733039 |
| M151_0.6 | |||||||||||||
| 4 | Ap4m1 | 162 | 14 | 20 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Apoe | 261 | 3 | 9 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Arrdc1 | 20 | 35 | 41 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Atp9a | 82 | 39 | 45 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Bmpr1a | 43 | 93 | 99 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Brsk1 | 313 | 47 | 53 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Capn3 | 222 | 115 | 121 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Cnot6 | 211 | 1 | 7 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Cst3 | 214 | 14 | 20 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Ctdsp2 | 93 | 124 | 130 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Dennd2a | 65 | 1 | 7 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Dennd4b | 224 | 109 | 115 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Dip2c | 290 | 115 | 121 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Dnajc14 | 311 | 29 | 35 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Dsp | 129 | 34 | 40 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Fam168b | 234 | 16 | 22 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Fat1 | 262 | 64 | 70 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Fzr1 | 12 | 8 | 14 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | G2e3 | 52 | 177 | 183 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Gpsm2 | 39 | 71 | 77 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Habp4 | 249 | 22 | 28 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Jak1 | 156 | 253 | 259 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Lgals8 | 203 | 298 | 304 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Maml1 | 38 | 215 | 221 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Mapkapk2 | 13 | 91 | 97 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Midn | 136 | 67 | 73 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Mrm1 | 1 | 13 | 19 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Mtf1 | 34 | 50 | 56 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Nr2c1 | 106 | 74 | 80 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Oplah | 188 | 225 | 231 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Pank1 | 48 | 339 | 345 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Phtf2 | 178 | 8 | 14 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Ppp1r2 | 75 | 1 | 7 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Rimklb | 300 | 68 | 74 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| 4 | Rps6ka6 | 80 | 53 | 59 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Schip1 | 236 | 44 | 50 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Sema4c | 306 | 172 | 178 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Slc26a2 | 194 | 103 | 109 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Sptb | 30 | 135 | 141 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Srsf11 | 153 | 80 | 86 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Suv39h1 | 220 | 16 | 22 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Syde2 | 251 | 137 | 143 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Tmem106b | 133 | 101 | 107 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Tnfrsf21 | 28 | 175 | 181 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Trim37 | 63 | 153 | 159 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Twsg1 | 237 | 30 | 36 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Ubxn2a | 14 | 213 | 219 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Wdr45 | 287 | 3 | 9 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.11088387 |
| 4 | Zbed6 | 275 | 125 | 131 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.09394328 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' UTRs of ToD Candidates 6h to 12h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M056_0.6 | |||||||||||||
| 1 | Enox2 | 34 | 180 | 186 | 11.468 | ACAACGA | 10.794 | -24.424 | 11.468 | 100.00000 | + | 6.103516e-05 | 0.4377213 |
| 1 | Klhdc10 | 125 | 5 | 11 | 10.794 | ACAACGG | 10.794 | -24.424 | 11.468 | 94.12278 | + | 1.220703e-04 | 0.6366855 |
| 1 | Notch1 | 129 | 61 | 67 | 10.794 | ACAACGG | 10.794 | -24.424 | 11.468 | 94.12278 | + | 1.220703e-04 | 0.6366855 |
| 1 | Trak1 | 184 | 237 | 243 | 11.468 | ACAACGA | 10.794 | -24.424 | 11.468 | 100.00000 | + | 6.103516e-05 | 0.4377213 |
| M074_0.6 | |||||||||||||
| 2 | Cystm1 | 239 | 95 | 102 | 11.571 | AGAAUGAG | 10.906 | -25.554 | 11.571 | 100.00000 | + | 1.525879e-05 | 0.4358521 |
| 2 | Dedd | 193 | 28 | 35 | 11.527 | UGAAUGAG | 10.906 | -25.554 | 11.571 | 99.61974 | + | 3.051758e-05 | 0.4358521 |
| 2 | Ggta1 | 109 | 6 | 13 | 10.992 | GGAAUGAG | 10.906 | -25.554 | 11.571 | 94.99611 | + | 7.629395e-05 | 0.4358521 |
| 2 | Mpped2 | 120 | 30 | 37 | 11.439 | AGAAUGAA | 10.906 | -25.554 | 11.571 | 98.85922 | + | 4.577637e-05 | 0.4358521 |
| M231_0.6 | |||||||||||||
| 4 | Bnc2 | 180 | 9 | 15 | 11.209 | AGCAUGC | 11.061 | -23.481 | 11.209 | 100.00000 | + | 6.103516e-05 | 0.2918142 |
| 4 | Kctd9 | 131 | 528 | 534 | 11.209 | AGCAUGC | 11.061 | -23.481 | 11.209 | 100.00000 | + | 6.103516e-05 | 0.2918142 |
| 4 | Parp9 | 127 | 144 | 150 | 11.209 | AGCAUGC | 11.061 | -23.481 | 11.209 | 100.00000 | + | 6.103516e-05 | 0.2918142 |
| 4 | Trak1 | 151 | 16 | 22 | 11.209 | AGCAUGC | 11.061 | -23.481 | 11.209 | 100.00000 | + | 6.103516e-05 | 0.2918142 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' UTRs of ToD Candidates 12h to 24h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M109_0.6 | |||||||||||||
| 2 | Arf2 | 27 | 218 | 224 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Fgfr1 | 87 | 195 | 201 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Hif1a | 9 | 7 | 13 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Hlcs | 148 | 15 | 21 | 11.664 | GCGCGGG | 10.717 | -26.25 | 11.664 | 100.000 | + | 6.103516e-05 | 0.1195535 |
| 2 | Mthfsd | 93 | 44 | 50 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Nuak2 | 24 | 54 | 60 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Phlpp1 | 28 | 59 | 65 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Srcin1 | 44 | 33 | 39 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Tbc1d2b | 99 | 15 | 21 | 11.664 | GCGCGGG | 10.717 | -26.25 | 11.664 | 100.000 | + | 6.103516e-05 | 0.1195535 |
| 2 | Tmcc3 | 89 | 54 | 60 | 10.717 | GCGCGCG | 10.717 | -26.25 | 11.664 | 91.881 | + | 1.220703e-04 | 0.1195535 |
| 2 | Vangl1 | 1 | 149 | 155 | 11.664 | GCGCGGG | 10.717 | -26.25 | 11.664 | 100.000 | + | 6.103516e-05 | 0.1195535 |
| 2 | Zfp777 | 98 | 3 | 9 | 11.664 | GCGCGGG | 10.717 | -26.25 | 11.664 | 100.000 | + | 6.103516e-05 | 0.1195535 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' UTRs of ToD Candidates 24h to 36h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M075_0.6 | |||||||||||||
| 2 | Capn3 | 110 | 106 | 112 | 10.577 | UUUUUUU | 10.577 | -25.307 | 11.726 | 90.20126 | + | 1.220703e-04 | 0.10140287 |
| 2 | Chchd7 | 101 | 21 | 27 | 11.726 | UUUUUUG | 10.577 | -25.307 | 11.726 | 100.00000 | + | 6.103516e-05 | 0.10140287 |
| 2 | Dedd | 61 | 25 | 31 | 11.726 | UUUUUUG | 10.577 | -25.307 | 11.726 | 100.00000 | + | 6.103516e-05 | 0.10140287 |
| 2 | Foxp1 | 102 | 155 | 161 | 11.726 | UUUUUUG | 10.577 | -25.307 | 11.726 | 100.00000 | + | 6.103516e-05 | 0.10140287 |
| 2 | Jag1 | 15 | 1 | 7 | 10.577 | UUUUUUU | 10.577 | -25.307 | 11.726 | 90.20126 | + | 1.220703e-04 | 0.10140287 |
| 2 | Peli1 | 49 | 136 | 142 | 10.577 | UUUUUUU | 10.577 | -25.307 | 11.726 | 90.20126 | + | 1.220703e-04 | 0.10140287 |
| 2 | Spta1 | 29 | 33 | 39 | 10.577 | UUUUUUU | 10.577 | -25.307 | 11.726 | 90.20126 | + | 1.220703e-04 | 0.10140287 |
| 2 | Tmem102 | 16 | 144 | 150 | 10.577 | UUUUUUU | 10.577 | -25.307 | 11.726 | 90.20126 | + | 1.220703e-04 | 0.10140287 |
| M149_0.6 | |||||||||||||
| 3 | Capn3 | 110 | 106 | 112 | 10.929 | UUUUUUU | 10.929 | -25.272 | 12.050 | 90.69710 | + | 1.220703e-04 | 0.09415981 |
| 3 | Chchd7 | 101 | 20 | 26 | 12.050 | CUUUUUU | 10.929 | -25.272 | 12.050 | 100.00000 | + | 6.103516e-05 | 0.09415981 |
| 3 | Dedd | 61 | 24 | 30 | 12.050 | CUUUUUU | 10.929 | -25.272 | 12.050 | 100.00000 | + | 6.103516e-05 | 0.09415981 |
| 3 | Foxp1 | 102 | 154 | 160 | 12.050 | CUUUUUU | 10.929 | -25.272 | 12.050 | 100.00000 | + | 6.103516e-05 | 0.09415981 |
| 3 | Jag1 | 15 | 1 | 7 | 10.929 | UUUUUUU | 10.929 | -25.272 | 12.050 | 90.69710 | + | 1.220703e-04 | 0.09415981 |
| 3 | Peli1 | 49 | 136 | 142 | 10.929 | UUUUUUU | 10.929 | -25.272 | 12.050 | 90.69710 | + | 1.220703e-04 | 0.09415981 |
| 3 | Spta1 | 29 | 32 | 38 | 12.050 | CUUUUUU | 10.929 | -25.272 | 12.050 | 100.00000 | + | 6.103516e-05 | 0.09415981 |
| 3 | Tmem102 | 16 | 143 | 149 | 12.050 | CUUUUUU | 10.929 | -25.272 | 12.050 | 100.00000 | + | 6.103516e-05 | 0.09415981 |
| M150_0.6 | |||||||||||||
| 4 | Capn3 | 110 | 106 | 112 | 10.833 | UUUUUUU | 10.833 | -26.250 | 12.280 | 88.21661 | + | 1.220703e-04 | 0.10140287 |
| 4 | Chchd7 | 101 | 21 | 27 | 12.280 | UUUUUUG | 10.833 | -26.250 | 12.280 | 100.00000 | + | 6.103516e-05 | 0.10140287 |
| 4 | Dedd | 61 | 25 | 31 | 12.280 | UUUUUUG | 10.833 | -26.250 | 12.280 | 100.00000 | + | 6.103516e-05 | 0.10140287 |
| 4 | Foxp1 | 102 | 155 | 161 | 12.280 | UUUUUUG | 10.833 | -26.250 | 12.280 | 100.00000 | + | 6.103516e-05 | 0.10140287 |
| 4 | Jag1 | 15 | 1 | 7 | 10.833 | UUUUUUU | 10.833 | -26.250 | 12.280 | 88.21661 | + | 1.220703e-04 | 0.10140287 |
| 4 | Peli1 | 49 | 136 | 142 | 10.833 | UUUUUUU | 10.833 | -26.250 | 12.280 | 88.21661 | + | 1.220703e-04 | 0.10140287 |
| 4 | Spta1 | 29 | 33 | 39 | 10.833 | UUUUUUU | 10.833 | -26.250 | 12.280 | 88.21661 | + | 1.220703e-04 | 0.10140287 |
| 4 | Tmem102 | 16 | 144 | 150 | 10.833 | UUUUUUU | 10.833 | -26.250 | 12.280 | 88.21661 | + | 1.220703e-04 | 0.10140287 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' UTRs of ToD Candidates 36h to 48h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M344_0.6 | |||||||||||||
| 1 | Abcd4 | 117 | 128 | 131 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Arhgap27 | 64 | 9 | 12 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | B4galt1 | 13 | 32 | 35 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Bcl2l11 | 83 | 16 | 19 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Cdkn2d | 123 | 34 | 37 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Cenpn | 104 | 272 | 275 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Clcn2 | 77 | 201 | 204 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Fam222b | 52 | 29 | 32 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Flnc | 58 | 37 | 40 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Flywch1 | 26 | 27 | 30 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Fndc9 | 50 | 45 | 48 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Fstl1 | 84 | 172 | 175 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Jph4 | 71 | 159 | 162 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Kank1 | 37 | 107 | 110 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Mapk6 | 20 | 65 | 68 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Mbtps1 | 32 | 176 | 179 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Mlh3 | 94 | 39 | 42 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Mlxip | 47 | 118 | 121 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Mocs1 | 14 | 15 | 18 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Mutyh | 81 | 78 | 81 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Myo1d | 22 | 11 | 14 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Nr2f6 | 2 | 65 | 68 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Odf2l | 131 | 125 | 128 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Plxnb1 | 48 | 64 | 67 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Ppp1r16a | 89 | 55 | 58 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Rbm47 | 108 | 2 | 5 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Rnf111 | 6 | 105 | 108 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Rragd | 41 | 80 | 83 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Sall2 | 92 | 13 | 16 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Sbno2 | 23 | 11 | 14 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Shroom4 | 63 | 23 | 26 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Slc29a2 | 96 | 7 | 10 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Spata24 | 99 | 13 | 16 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Stk16 | 112 | 33 | 36 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Tmem245 | 49 | 12 | 15 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Traf3ip2 | 3 | 77 | 80 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Trak1 | 128 | 1 | 4 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Trio | 102 | 53 | 56 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Vasn | 19 | 10 | 13 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Wwp1 | 91 | 169 | 172 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Zfp395 | 98 | 45 | 48 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Zfp433 | 118 | 25 | 28 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Zfp597 | 38 | 302 | 305 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| 1 | Zfp7 | 101 | 52 | 55 | 6.133 | CCAG | 6.133 | -26.632 | 6.133 | 100 | + | 0.00390625 | 0.4640289 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 3' UTRs of ToD Candidates 36h to 48h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M043_0.6 | |||||||||||||
| 1 | B4galt1 | 13 | 1300 | 1306 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Bcl2l11 | 42 | 1787 | 1793 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Clip2 | 26 | 365 | 371 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Fam222b | 32 | 169 | 175 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Flywch1 | 25 | 64 | 70 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Fndc9 | 49 | 480 | 486 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Glt1d1 | 88 | 2142 | 2148 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Jam3 | 7 | 581 | 587 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Jph4 | 18 | 145 | 151 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Lin28b | 47 | 3145 | 3151 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Mapk6 | 27 | 1052 | 1058 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Mlh3 | 16 | 379 | 385 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Mlxip | 38 | 2861 | 2867 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Mocs1 | 87 | 37 | 43 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Myo1d | 20 | 458 | 464 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Plxnb1 | 44 | 1609 | 1615 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Pyurf | 59 | 1059 | 1065 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Rbm47 | 58 | 895 | 901 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Sall2 | 46 | 675 | 681 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Sbno2 | 124 | 105 | 111 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Shroom4 | 50 | 552 | 558 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Slc29a2 | 114 | 24 | 30 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Tmem245 | 45 | 3804 | 3810 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Trak1 | 104 | 53 | 59 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Trio | 112 | 299 | 305 | 9.659 | CCUCCCC | 9.659 | -21.505 | 10.507 | 91.92919 | + | 1.220703e-04 | 0.2468018 |
| 1 | Wwp1 | 24 | 1776 | 1782 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| 1 | Zfp395 | 33 | 489 | 495 | 10.507 | CCUUCCC | 9.659 | -21.505 | 10.507 | 100.00000 | + | 6.103516e-05 | 0.2330905 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 5' UTRs of ToD Candidates 48h to 72h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M151_0.6 | |||||||||||||
| 1 | 1110065P20Rik | 144 | 40 | 46 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Arhgap27 | 117 | 39 | 45 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Arhgef25 | 245 | 324 | 330 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Clcn7 | 142 | 2 | 8 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Cpeb4 | 17 | 10 | 16 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Dennd4a | 35 | 70 | 76 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | E2f6 | 212 | 9 | 15 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Eef2k | 41 | 266 | 272 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Elovl6 | 118 | 68 | 74 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Enkd1 | 217 | 82 | 88 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Extl2 | 86 | 104 | 110 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Fyn | 152 | 69 | 75 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Galnt3 | 30 | 297 | 303 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Gpsm2 | 33 | 71 | 77 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Kat2a | 13 | 54 | 60 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Kif5c | 32 | 258 | 264 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Mid1 | 108 | 78 | 84 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Mrm1 | 11 | 13 | 19 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Nbeal2 | 149 | 15 | 21 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Neo1 | 224 | 124 | 130 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Plxnb1 | 165 | 28 | 34 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Pmvk | 22 | 21 | 27 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Ppp2r5b | 24 | 10 | 16 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Rab31 | 79 | 34 | 40 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Rbsn | 258 | 246 | 252 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Sclt1 | 174 | 342 | 348 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Sema4c | 242 | 172 | 178 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Sirpa | 75 | 266 | 272 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Sirt5 | 237 | 195 | 201 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Six5 | 64 | 1 | 7 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Socs6 | 136 | 28 | 34 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Stambpl1 | 151 | 81 | 87 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Syt13 | 23 | 58 | 64 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Tex264 | 236 | 3 | 9 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Tlcd1 | 189 | 19 | 25 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Tmub1 | 133 | 8 | 14 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Uvrag | 244 | 115 | 121 | 9.360 | GGGAGGC | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Zbed4 | 65 | 39 | 45 | 11.532 | GGGAGGG | 9.36 | -21.392 | 11.532 | 100.00000 | + | 6.103516e-05 | 0.1073765 |
| 1 | Zfhx3 | 250 | 253 | 259 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| 1 | Zfp59 | 200 | 104 | 110 | 9.360 | GGGAGGA | 9.36 | -21.392 | 11.532 | 81.16545 | + | 1.831055e-04 | 0.1225493 |
| ToD genes carrying RBP motifs | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| in 3' UTRs of ToD Candidates 48h to 72h | |||||||||||||
| motif.i | sequence | sequence.i | start | stop | score | match | thresh.score | min.score | max.score | score.pct | strand | pvalue | qvalue |
| M044_0.6 | |||||||||||||
| 2 | Dennd4a | 61 | 1582 | 1588 | 10.141 | GCGCGCG | 9.789 | -20.902 | 10.141 | 100.00000 | + | 6.103516e-05 | 1.0000000 |
| 2 | Lrfn1 | 74 | 168 | 174 | 9.789 | CCGCGCG | 9.789 | -20.902 | 10.141 | 96.52894 | + | 1.220703e-04 | 1.0000000 |
| M109_0.6 | |||||||||||||
| 3 | Dennd4a | 61 | 1582 | 1588 | 10.717 | GCGCGCG | 10.717 | -26.250 | 11.664 | 91.88100 | + | 1.220703e-04 | 1.0000000 |
| 3 | Lrfn1 | 74 | 214 | 220 | 11.664 | GCGCGGG | 10.717 | -26.250 | 11.664 | 100.00000 | + | 6.103516e-05 | 1.0000000 |
| 3 | Mapk8ip3 | 148 | 717 | 723 | 11.664 | GCGCGGG | 10.717 | -26.250 | 11.664 | 100.00000 | + | 6.103516e-05 | 1.0000000 |
| 3 | Mid1 | 41 | 1534 | 1540 | 11.664 | GCGCGGG | 10.717 | -26.250 | 11.664 | 100.00000 | + | 6.103516e-05 | 1.0000000 |
| M307_0.6 | |||||||||||||
| 4 | A430033K04Rik | 126 | 9 | 13 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Aifm2 | 115 | 2 | 6 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Ap1g2 | 59 | 201 | 205 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Apba3 | 58 | 53 | 57 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Aplf | 44 | 1030 | 1034 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Arhgap27 | 64 | 226 | 230 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Arhgef25 | 14 | 142 | 146 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Atrip | 150 | 182 | 186 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Bbs1 | 234 | 688 | 692 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Camk2b | 81 | 1401 | 1405 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Cass4 | 111 | 398 | 402 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Cdr2l | 68 | 809 | 813 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Cep128 | 138 | 13 | 17 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Clcn7 | 46 | 451 | 455 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Cldn6 | 21 | 31 | 35 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Cnnm4 | 175 | 153 | 157 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Cpeb4 | 99 | 1708 | 1712 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Dennd4a | 61 | 163 | 167 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | E2f6 | 12 | 571 | 575 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Eef2k | 71 | 40 | 44 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Eid2 | 45 | 115 | 119 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Elovl6 | 82 | 888 | 892 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Enkd1 | 8 | 33 | 37 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Extl2 | 31 | 421 | 425 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Fancm | 63 | 323 | 327 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Fbxo42 | 24 | 700 | 704 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Gpsm2 | 26 | 66 | 70 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Gpt2 | 165 | 910 | 914 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Jph1 | 69 | 591 | 595 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Kat2a | 3 | 98 | 102 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Kif5c | 19 | 328 | 332 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Lrfn1 | 74 | 83 | 87 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Mapk8ip3 | 118 | 147 | 151 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Mid1 | 41 | 29 | 33 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Mmab | 66 | 113 | 117 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Mrm1 | 4 | 393 | 397 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Mtfp1 | 16 | 351 | 355 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Nbeal2 | 183 | 102 | 106 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Neo1 | 125 | 265 | 269 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Pick1 | 13 | 219 | 223 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Plxnb1 | 77 | 6 | 10 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Ppp2r5b | 32 | 261 | 265 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Prex2 | 23 | 484 | 488 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Rab13 | 40 | 48 | 52 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Rab31 | 127 | 154 | 158 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Rbsn | 17 | 436 | 440 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Rdh11 | 149 | 16 | 20 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Rnd3 | 6 | 282 | 286 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Rogdi | 25 | 320 | 324 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Rpl37 | 36 | 339 | 343 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Sclt1 | 174 | 220 | 224 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Sema4c | 102 | 81 | 85 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Sirpa | 56 | 1146 | 1150 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Sirt5 | 239 | 278 | 282 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Six5 | 50 | 143 | 147 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Slc1a3 | 15 | 877 | 881 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Slc35a4 | 54 | 495 | 499 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Sntb1 | 38 | 178 | 182 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Socs6 | 103 | 188 | 192 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Syt13 | 28 | 781 | 785 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tada2b | 22 | 1655 | 1659 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Thap4 | 93 | 254 | 258 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tlcd1 | 100 | 26 | 30 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tmem104 | 53 | 646 | 650 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tmem161a | 171 | 241 | 245 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tmem177 | 62 | 774 | 778 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tmem38b | 34 | 131 | 135 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tmub1 | 35 | 62 | 66 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tnip2 | 30 | 45 | 49 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tob1 | 65 | 714 | 718 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Tsc22d3 | 55 | 834 | 838 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Uvrag | 57 | 45 | 49 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Wdr54 | 131 | 99 | 103 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zbed4 | 48 | 896 | 900 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zfhx3 | 43 | 1649 | 1653 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zfp266 | 197 | 1073 | 1077 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zfp59 | 215 | 28 | 32 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zfp7 | 10 | 138 | 142 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zfp748 | 206 | 137 | 141 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zfp871 | 47 | 904 | 908 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |
| 4 | Zfyve21 | 5 | 6 | 10 | 9.793 | AGGGA | 9.793 | -33.290 | 9.793 | 100.00000 | + | 9.765625e-04 | 0.6235055 |